Calling CRISPRs and Repairing Repeats 11 Nov 2022

A post-hoc fix for a popular CRISPR identification tool, implemented in R. ...

Lost at the crossroads: genes at the nodes of short-read assembly graphs 5 Mar 2022

A brief functional analysis of the sequence content of high-degree segments in metaSPAdes graphs. ...

Parsing GTF files in the tidyverse 9 Nov 2021

An R + tidyverse approach for reading GTF annotations. ...

Blogdown site personalization 7 Jan 2021

A collection of code snippets and helpful links for building a Hugo site with Blogdown. ...

Restriction enzyme sites across bacterial genomes: implications for metagenomics 6 Jan 2021

Some thoughts on the use of sequence-biased enzymes for metagenomic proximity ligation, and suggestions for best practices. ...